SubtiBank SubtiBank
yjlC [2018-06-29 17:26:43]
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yjlC [2018-06-29 17:26:43]

unknown
locus
BSU12280
pI
4.26
mw
15.44 kDa
protein length
140 aa Sequence Blast
gene length
420 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
rex
Outlinks
KEGGBsubCycSubtiListUniProt

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.9|Newly identified competence genes]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    1,298,612 → 1,299,034

    Expression and Regulation

    Operons

    genes
    [gene|8279630BE1D1D214162BA8E06FC05146F9ED517D|yjlC]-[gene|56F407D408272F3674612C9CDFE4A922680EC694|ndh]
    description
    [Pubmed|17015645]

    regulatory mechanism

  • [protein|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex]: repression, [Pubmed|17015645], in [regulon|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex regulon]
  • [regulon|stringent response|stringent response]: negative regulation, in [regulon|stringent response|stringent response]
  • [protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|ResD]: repression, [pubmed|28439033], in [regulon|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|ResD regulon]

    • regulation

  • induced at high NADH+ levels ([protein|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex]) [Pubmed|17015645]
  • repressed under anaerobic conditions ([protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|ResD]) [pubmed|28439033,10913079]
    • view in new tab

    genes
    [gene|2F5683B654BD1B7FA4D55011CCE6413C38DB3F4D|yjlB]-[gene|8279630BE1D1D214162BA8E06FC05146F9ED517D|yjlC]-[gene|56F407D408272F3674612C9CDFE4A922680EC694|ndh]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A359 (yjlC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/359 NBRP B. subtilis, Japan]
  • BKE12280 (Δ[gene|8279630BE1D1D214162BA8E06FC05146F9ED517D|yjlC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCCAATTCTCCTTTAC, downstream forward: _UP4_TAATCTCAGATTCAAATTGA
  • BKK12280 (Δ[gene|8279630BE1D1D214162BA8E06FC05146F9ED517D|yjlC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCCAATTCTCCTTTAC, downstream forward: _UP4_TAATCTCAGATTCAAATTGA

    • References

  • 17015645,11948165,28439033,10913079